Basic Information
VIS ID
TVIS10003984
Fusion event
HBV-LOC105370507 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
54620244/54153526 (Hg38)
End
54620244/54153526 (Hg38)
Location type
Intronic
Target gene
LOC105370507
Nearest miRNA
hsa-mir-208a/Upstream/205042; hsa-mir-1185-1/Downstream/724587;
Nearest TSS
ENST00000550708/Upstream/194765; ENST00000541304/Downstream/243323;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/189574, chr14-CpG: 82/Downstream/243179
Nearby gene
BMP4(-196690) ; CDKN3(+243429) ;
Upstream sequence
AATATGTGAATGTAGTCCTTTAATTTTTTAATTAAAGATTTCAACTGGCTGATGAAAAAAGCCATGGAGTTATATCAAAAACAAAAAAAGAAAATTGTCA
Downstream sequence
CATTGTAGCtaaagtagcaataaagcattatttatacctcttagaatagaagaactttaaaagaggggtaacatatcatacttaaggttaatggagaaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate