Basic Information
VIS ID
TVIS10003987
Fusion event
HBV-chr17 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
25323468/26996442 (Hg38)
End
25323468/26996442 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/7651868; hsa-mir-10226/Downstream/297468;
Nearest TSS
ENST00000595228/Upstream/4303608; ENST00000583786/Downstream/3483;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/14169, chr17-CpG: 67/Downstream/297531
Nearby gene
MIR4522(+297468) ;
Upstream sequence
ccagaagcgaacatgagtaattctgtgaaaacctgggtatagagaaggctttcatcattatgcttcaaagaatctgatgcactcacagaatgaactagca
Downstream sequence
aattaatacataaatattaagcgaaacctttttacatggccaaaaacaccataaatgacagcaaaatacaagtaaaaaattgggagacaatgtttgcagc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate