Basic Information
VIS ID
TVIS10004001
Fusion event
HBV-LOC105376980 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
46526987/47898243 (Hg38)
End
46526987/47898243 (Hg38)
Location type
Intronic
Target gene
LOC105376980
Nearest miRNA
hsa-mir-103a-2/Upstream/731185; hsa-mir-1-1/Downstream/1965616;
Nearest TSS
ENST00000382410/Upstream/111627; ENST00000431915/Downstream/52556;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/111480, chr20-CpG: 28/Downstream/52804
Nearby gene
SULF2(-111627) ; PRPF31(+81850) ;
Upstream sequence
ctggagacccagggaggagtcggagctgctgatctagtttgaaggctgtggagctgcagatcccaggaagagccggtgctgccgttcaaatctGTGGGTC
Downstream sequence
TTGGAGTTGGAGCCCTGGGGTGACCCAGTTCTTTCATTCATGTCTTAGGATCATGGAACTGGAAACCTACGGAGGCGGCGGTACTGCTGTtctagtttaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate