Basic Information
VIS ID
TVIS10004004
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
40285615/39819943 (Hg38)
End
40285615/39819943 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/1730614; hsa-mir-101-1/Downstream/934412;
Nearest TSS
ENST00000473358/Upstream/2483; ENST00000418255/Downstream/27814;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/30443, chr1-CpG: 33/Downstream/63326
Nearby gene
BMP8B(-31082) ; TRIT1(+21091) ;
Nearest cancer related gene
TRIT1(TSG, +21091) ;
Upstream sequence
CTCACTCAGGGCCCTCTTGGTGCTTGGCATTTAGAACTGCATTCTTCCAATTAAAAAATATGTACAAACTTTTGCTCAATAAAATGTGATAAAACTGCAA
Downstream sequence
TGCTGAATATGAGCTCATAcacttattagctgtatgtccacgaacaagttactacttatcttctctttagctccatctctttattgaaaagcgaggacaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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