XYLT1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004007
Fusion event
HBV-XYLT1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
17337492/17243635 (Hg38)
End
17337492/17243635 (Hg38)
Location type
Intronic
Target gene
XYLT1
miRNAs that regulate target gene
hsa-mir-16-5p
Nearest miRNA
hsa-mir-1225/Upstream/874693; hsa-mir-11401/Downstream/1100378;
Nearest TSS
ENST00000527434/Upstream/109131; ENST00000564852/Downstream/15393;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/869037, chr16-CpG: 103/Downstream/226652
Upstream sequence
CCAatcatcatccccattctatagattaaagatcaagcaacagagcagtgaagtcccttgcacaaggtcccgagtgagggaggggcacagctaaaattca
Downstream sequence
aacccaagccgaccgactcaagctttcactgctaagcacagttctatGTGCTTAGCACAAGGAGCGGCAACGGTCAGCAATCAATGTGAGGTGTCTCATT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate