hsa-mir-4434 _LIHC.png
SIPA1L1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004012
Fusion event
HBV-SIPA1L1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
72010765/71544048 (Hg38)
End
72010765/71544048 (Hg38)
Location type
Intronic
Target gene
SIPA1L1
miRNAs that regulate target gene
hsa-mir-92a-3p ; hsa-mir-4531 ; hsa-mir-5581-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-539-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p
Nearest miRNA
hsa-mir-208a/Upstream/4102118; hsa-mir-1185-1/Downstream/972772;
Nearest TSS
ENST00000550708/Upstream/14723; ENST00000555066/Downstream/42233;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/222540, chr14-CpG: 114/Downstream/387899
Upstream sequence
atacgcacatgtatgtatatataCACACACGCACatgtatatatacacacacgcacatgtatatatacacatacgcacatgtatgtatatacacacgcac
Downstream sequence
gcacatgtatgtatatacacacgcacgcacatgtatgtatatacacacgcacatgtatgtatatacacatatatgcacgtgtatgtatatacatatatGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate