Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004014
Fusion event
HBV-MUSK integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q31.3
Reference genome
End
113498715/110736435 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/1224890; hsa-mir-12126/Downstream/534721;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/156686, chr9-CpG: 129/Downstream/301198
Upstream sequence
ATATGAGGATGAAAAGTTGGCACTGCTTTTATTGGCTAGACAATGGATCATGAGAAAATGAAATATTACCATGAACAGAAGCTGCTGTGGTGTGCTGCCT
Downstream sequence
ggaacataactagacaaagtctctgagataatggtatacatggcatgtcagaaaaacagcaaggagaccaatgtggttagtggggagtaagcaaagggtc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.