Basic Information
VIS ID
TVIS10004023
Fusion event
HBV-chr12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
34414852/34261917 (Hg38)
End
34414852/34261917 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/8387838; hsa-let-7i/Downstream/8061783;
Nearest TSS
ENST00000382841/Upstream/43064; ENST00000553138/Downstream/4054661;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/42548, chr12-CpG: 30/Downstream/73758
Nearby gene
ALG10(-233616) ;
Upstream sequence
gcagtcagccgtgacccactgtaacctgggcaatcctgtgagaaagaaagaaaagaaagaaagaaaaaaggaagaaagaaagagagagaaaaaagaaaag
Downstream sequence
aaaggaaaagaagagaaaagaaaagaagagaaCCAAaggcgagcagatcacgaggtcaggagatcaagaccatcctggccaacatggtgaaactctgtct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate