Basic Information
VIS ID
TVIS10004028
Fusion event
HBV-chr15 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
38653763/38361562 (Hg38)
End
38653763/38361562 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1233-1/Upstream/1388661; hsa-mir-10393/Downstream/3330023;
Nearest TSS
ENST00000557528/Upstream/108381; ENST00000305752/Downstream/92565;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/108527, chr15-CpG: 42/Downstream/92511
Nearby gene
SPRED1(-4313) ; FAM98B(+92565) ;
Upstream sequence
acatacctactgggggtctcactggcatttcagttttaatgaggccaaaacagaactgattttcccctccaaacctgctccacctccaggatgctttatt
Downstream sequence
ttaagaaatgatcataattcacccagttgttcagagatttcatctttttgcttcatgctttaaatacagaccaacgagagattcaacttaaaaataaatt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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