MYO3B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004029
Fusion event
HBV-MYO3B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
171493227/170636717 (Hg38)
End
171493227/170636717 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
MYO3B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1-3p
Nearest miRNA
hsa-mir-128-1/Upstream/2053699; hsa-mir-10b/Downstream/4530916;
Nearest TSS
ENST00000437798/Upstream/228153; ENST00000487037/Downstream/58657;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/808598, chr2-CpG: 44/Downstream/75095
Upstream sequence
AGGTGCCAAGTCAGCCAGAGCCTCCCACCCTTCCAGAGCTGGTGGCGCGTTTCCCGGTGCCATCATGGATGTCCAAGATCATTCCAGTGAAGAGCTCATG
Downstream sequence
TTAATATGATTTTCTCTATATTGTCAGATAAATGCTGCCAGGTTTCTGATTGTTAATATTTTATTTGACTAAACCAAGACAACCAAGTCCCTGAAAGAAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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