Basic Information
VIS ID
TVIS10004031
Fusion event
HBV-LOC107985046 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
84705160/84239477 (Hg38)
End
84705160/84239477 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
LOC107985046
Nearest miRNA
hsa-mir-101-1/Upstream/7179275; hsa-mir-11399/Downstream/894317;
Nearest TSS
ENST00000473358/Upstream/57817; ENST00000479082/Downstream/58889;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/160899, chr1-CpG: 77/Downstream/58948
Nearby gene
PRKACB(-979) ; SAMD13(+58889) ;
Upstream sequence
aaggcctttgaagaggtaattaaagtaaaatgaggtcatatgggaagacttcatccaagatgactgatgtcctcataagaagcacacagacaaagggagg
Downstream sequence
accacgtaaagacataggaagaagatgaccatctatagggcaaggacagaggcctccaaagaagctgactttgccaacatcttgacttgggacttctaga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate