VISDB Viral Integration Site DataBase

VIS ID

TVIS10004037

Fusion event

HBV-KIF13A integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr6

Cytoband

p22.3

Reference genome

Start

End

17767811/17767580 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-3941 ; hsa-mir-548aw ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-7847-3p ; hsa-mir-6851-5p ; hsa-mir-3650 ; hsa-mir-3689d ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-1284 ; hsa-mir-3613-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-130a-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-429 ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-342-3p ; hsa-mir-3177-5p ; hsa-mir-203a-3p ; hsa-mir-511-3p ; hsa-mir-5680 ; hsa-mir-8485 ; hsa-mir-603

Nearest miRNA

hsa-mir-3691/Upstream/1625956; hsa-mir-10398/Downstream/804204;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/60472, chr6-CpG: 123/Downstream/219641

Upstream sequence

gccgagattttgccactgcactccatcctgggctacagagccagacaccgtcataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGTTGCATGGTT

Downstream sequence

CTCTTCTATTTCCTTTTGATTTAAGTTGGCAAACACAATTCTCCAAGTCCAAGCATACCTGATGCAATTAATTACTAAATTACTATTTACTATAATTAAG