SEMA3A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004051
Fusion event
HBV-SEMA3A integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
84096087/84466771 (Hg38)
End
84096087/84466771 (Hg38)
Location type
Intronic
Target gene
SEMA3A
miRNAs that regulate target gene
hsa-mir-223-3p
Nearest miRNA
hsa-mir-10525/Upstream/8551502; hsa-mir-10399/Downstream/7737244;
Nearest TSS
ENST00000635602/Upstream/94480; ENST00000450977/Downstream/25778;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/716934, chr7-CpG: 31/Downstream/473151
Nearby gene
SEMA3A(-271870) ;
Upstream sequence
ACAAACACACCAGGAGTGAGGTGAAGGCCCAGTACCTCCCAGACCAAGGCTCCCTCTAGGAAACCTGTGAGAACATACTTTTGACCATCAGGTGCAGATG
Downstream sequence
TTTGTGAGTGAGTCCCTAGCTGGGATCCTCTCCTACCtgtagttcccctttgtgagcttgagttgatagaggtagcaccactttatccctcactttaata
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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