Basic Information
VIS ID
TVIS10004054
Fusion event
HBV-LOC107985255 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
209180006/209006661 (Hg38)
End
209180006/209006661 (Hg38)
Location type
Intronic
Target gene
LOC107985255
Nearest miRNA
hsa-mir-101-1/Upstream/1204138; hsa-mir-1182/Downstream/425472;
Nearest TSS
ENST00000473358/Upstream/34207; ENST00000448988/Downstream/148440;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/762377, chr1-CpG: 72/Downstream/224839
Nearby gene
PLXNA2(-762341) ; MIR205HG(+422162) ;
Upstream sequence
GGGAGAAATAGGGACTAGGAAGCCATCGTTGTTTGTTCTTGATACAATAGCTGAAGTTCCTGATATTGCTCACCTGAAAATTTGAGGCGTGGGAGTGGGG
Downstream sequence
TGAAGACCTGATATCTTAATTTCCAGGTTCAGAAGTAAAGTGCCAATAATATCAACTTATGAAAAATGATCCTATGACAAACCTCACATGTGGTACTAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate