ARHGEF10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004058
Fusion event
HBV-ARHGEF10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
1852082/1903916 (Hg38)
End
1852082/1903916 (Hg38)
Location type
Intronic
Target gene
ARHGEF10
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-3674/Upstream/86609; hsa-mir-10400/Downstream/172673;
Nearest TSS
ENST00000518652/Upstream/21260; ENST00000524212/Downstream/319;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/21074, chr8-CpG: 17/Downstream/40153
Upstream sequence
gtgaagtgactctcttctctggcctggtctttacaagggagggattgtgacatattgctgaacccagcactcaggtatttgactctcttttttttttttg
Downstream sequence
gaacccatatctaaaaaaagaaaaaaaaaatagctgggcacagtggcatgcacctatatagtctgagctacgtgggaggctgaggccagaggattgctcg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate