Basic Information
VIS ID
TVIS10004061
Fusion event
HBV-NPSR1-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
34642085/34602473 (Hg38)
End
34642085/34602473 (Hg38)
Location type
ncRNA_intronic
Target gene
NPSR1-AS1
Nearest miRNA
hsa-mir-1183/Upstream/1869396; hsa-mir-10399/Downstream/338287;
Nearest TSS
ENST00000635602/Upstream/392947; ENST00000465305/Downstream/55766;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/523326, chr7-CpG: 203/Downstream/434051
Upstream sequence
ATTTCATTTTTGTTTTTAAAATTTCGTGGCTCAGTactttctcccatctttctgttttttttttttttctgagccctacaaactttttcaacctctgccc
Downstream sequence
GCAGCCATAGGAAGCCATCAGTCACAACAATACCAGACTTAAGGGCTGAGGGACTCAGACAATGACTCTACAGggggaccgcaaaaagtgtgtgaaaaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate