RELN _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004062
Fusion event
HBV-RELN integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
103447866/103807419 (Hg38)
End
103447866/103807419 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
RELN
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-138-5p ; hsa-mir-10a-5p
Nearest miRNA
hsa-mir-10525/Upstream/1335888; hsa-mir-10399/Downstream/10845926;
Nearest TSS
ENST00000635602/Upstream/177283; ENST00000401970/Downstream/182097;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/361026, chr7-CpG: 122/Downstream/181659
Upstream sequence
AGGGGAAGAGGTTGAAGATGCAGGAGTGAGGGGCATCACTGGGGGATGGGTGAGATGTGAGGCTTAAAGCAGCAATACTCAGTAGGGTCCCCAGTCCTCA
Downstream sequence
tgctgaaagtccattcgtgaagctttttgttgttattttatttttcaacttttagtttaggttcagggtatacatgtgcaggtttgtcacatgggtaaat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate