Basic Information
VIS ID
TVIS10004064
Fusion event
HBV-LOC105375631 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
89928078/88915849 (Hg38)
End
89928078/88915849 (Hg38)
Location type
Intronic
Target gene
LOC105375631
Nearest miRNA
hsa-mir-12123/Upstream/8674376; hsa-mir-10400/Downstream/2289636;
Nearest TSS
ENST00000518652/Upstream/106941; ENST00000517696/Downstream/701308;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/587597, chr8-CpG: 92/Downstream/841458
Nearby gene
MMP16(-588361) ; RIPK2(+841897) ;
Upstream sequence
tatattgcccagtgatgctcccacctcagccttctgaagtgcttcgattacaggcgtgagccactgcaaccggtctcacttagcgatagacatttaagat
Downstream sequence
agccctggaaatgaattctcccccagaaccttcacataagagccagctatctgacattttgactttagctttgtgagaatcagggaaaagaaaccaactg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate