APBA2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004068
Fusion event
HBV-APBA2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
29357281/29065078 (Hg38)
End
29357281/29065078 (Hg38)
Location type
Intronic
Target gene
APBA2
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-1268a/Upstream/574233; hsa-mir-10393/Downstream/1999954;
Nearest TSS
ENST00000557528/Upstream/20754; ENST00000382938/Downstream/5580;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/178016, chr15-CpG: 62/Downstream/38360
Upstream sequence
GGTGCCAGCAAGCCGAGGTGCTCATAgtgtgtgtgtgtgtgtgtgtgtgCACGCACGCTTGTATGTGAGATATTGACTTGCATTGTACTCATCTGCCGGT
Downstream sequence
GGGGTGTCTAGGGCAGATTGTGGGGAGTGAGAGCATTGGGTATGGGACCCAGGCTGTCCACGTGCGTCTGCTTCTTGAGGCCCCGTACCTCCCGTTCTTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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