Basic Information
VIS ID
TVIS10004079
Fusion event
HBV-chr6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q16.3
Reference genome
GRCh37/hg19
Start
103353154/102905279 (Hg38)
End
103353154/102905279 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3780583; hsa-mir-1202/Downstream/3878846;
Nearest TSS
ENST00000381078/Upstream/977136; ENST00000635857/Downstream/1827091;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1502181, chr6-CpG: 79/Downstream/1953965
Nearby gene
GRIK2(-835196) ; HACE1(+1822814) ;
Nearest cancer related gene
HACE1(TSG, +1822814) ;
Upstream sequence
aaaattggctctcaagattcctggaaatgtcaccctcagctgtcacgaggcagggagagccgcctgcagcacCTCCCGGCTGTGTGTGGTGTGTGCTGGG
Downstream sequence
aaaaaaaaggccggcgcagtggctcacgcctataatcacagcactttcggaggccgaggcgggggaataacgaggtcaaggatcgagaccaccctggcca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate