Basic Information
VIS ID
TVIS10004090
Fusion event
HBV-chr12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
121391989/120954186 (Hg38)
End
121391989/120954186 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/230920; hsa-mir-3612/Downstream/490087;
Nearest TSS
ENST00000382841/Upstream/49815; ENST00000541924/Downstream/24357;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/49553, chr12-CpG: 26/Downstream/24496
Nearby gene
SPPL3(-49834) ; HNF1A-AS1(+15652) ;
Upstream sequence
TCTCATCTGACATATATGACATAGACATTAGGACCCCATGTCGGTGGAtaaccatgtagccttgacttctctcttttttttttttttttttttttttttg
Downstream sequence
agatggagtctcactctgtctcccaggctggagtgcaatggtacaatctcggctcactgcaacctccgcctttcgggttcaagcaattctcctgcctcag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate