MTRF1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004097
Fusion event
HBV-MTRF1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
41820643/41246507 (Hg38)
End
41820643/41246507 (Hg38)
Location type
Intronic
Target gene
MTRF1
miRNAs that regulate target gene
hsa-mir-18a-3p ; hsa-mir-26a-5p
Nearest miRNA
hsa-mir-2276/Upstream/145407; hsa-mir-1267/Downstream/321779;
Nearest TSS
ENST00000623511/Upstream/19938; ENST00000483215/Downstream/14079;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/51881, chr13-CpG: 99/Downstream/64608
Upstream sequence
AATGAAGATATAACCATttggtttctaaagtcagcatgttagacaaaaattgagtatagttttagattacccttgaaaatgccttaggaaggtgtcttat
Downstream sequence
gagagactggcatactgtctcttaataagtccaacatagctgatcttcctccagcaataaaacatattactggataataatcttcataccaaataaagaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate