Basic Information
VIS ID
TVIS10004104
Fusion event
HBV-SAMD12-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q24.12
Reference genome
GRCh37/hg19
Start
119643343/118631104 (Hg38)
End
119643343/118631104 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
SAMD12-AS1
Nearest miRNA
hsa-mir-12123/Upstream/1756304; hsa-mir-10400/Downstream/694067;
Nearest TSS
ENST00000518652/Upstream/9109; ENST00000521788/Downstream/297969;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/9030, chr8-CpG: 24/Downstream/320603
Upstream sequence
TGTGGAGAAGGGGAAGCTCAGGAGGATAGGGGAGGGCGCAGGGGTGGGAGGGGGGTGCAAACGGGGTTCCGTGTGGACGCCCAGGAAAGCGGCCAGGCTG
Downstream sequence
ctctggagaactctgaatgaaacagcggcttaaaataaacatttatcatctcacacaatttctgtggctcaagggatatgagagcagcttagctgtgtgg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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