L3MBTL3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004110
Fusion event
HBV-L3MBTL3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
130425583/130104438 (Hg38)
End
130425583/130104438 (Hg38)
Location type
Exonic
Target gene
L3MBTL3
Nearest miRNA
hsa-mir-10398/Upstream/3619725; hsa-mir-1202/Downstream/1687734;
Nearest TSS
ENST00000381078/Upstream/33591; ENST00000617887/Downstream/33758;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/83133, chr6-CpG: 134/Downstream/260831
Upstream sequence
CTGTCATTAAAAACAATTTTGTCTTAATTTTGAAAATTGGATATGAGGAGTTACATTACACAAAACAACATTATACAATGATGGAGATAATGTTCTGTGC
Downstream sequence
CCCTATTCAGAAATCAATTTGAATAAAGACCGTATTTTTCCAGACCGCTTAAGTGGTGAGATGCCTCCGGCTAGTCCGTCATTTCCAAGAAATAAAAGGA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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