ZFPM2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004116
Fusion event
HBV-ZFPM2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
106807212/105794984 (Hg38)
End
106807212/105794984 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA8A
Target gene
ZFPM2
miRNAs that regulate target gene
hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-26b-5p ; hsa-mir-184
Nearest miRNA
hsa-mir-12123/Upstream/1310519; hsa-mir-10400/Downstream/6848509;
Nearest TSS
ENST00000518652/Upstream/104094; ENST00000520870/Downstream/31586;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/475092, chr8-CpG: 19/Downstream/420573
Upstream sequence
cagccctccagaatttcaccaccaaggaagtactttaccagcttctgtggcttctccttccttggtctgtgcacagagttgcagccctggtatgtgagca
Downstream sequence
acccctttctttgactaggaaagggaactccttgaccccttgcgcttcccgagtgaggcaatgcctcgccctgcttcagctcatgcacggtgcgctgcac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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