Basic Information
VIS ID
TVIS10004123
Fusion event
HBV-SELENOP integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37/hg19
Start
42805076/42804974 (Hg38)
End
42805076/42804974 (Hg38)
Location type
Intronic
Target gene
SELENOP
Nearest miRNA
hsa-mir-10397/Upstream/4247413; hsa-mir-103a-1/Downstream/11146530;
Nearest TSS
ENST00000502646/Upstream/48156; ENST00000606056/Downstream/1420;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/380029, chr5-CpG: 47/Downstream/119138
Upstream sequence
accattatatcattttatctgttagtttctttcttctcgtgtttcatgtagctattgttcttattaacttgacccatgtattttggtgtggctttgggga
Downstream sequence
GTCTAATACTAGTATTTTGAAATGTTATAGATATGTCACTATATAATATCAAAAATGTCATCACTGTGACTTGGTAAAATACAATTTTGTGACTGACTTA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate