hsa-mir-6777-3p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004124
Fusion event
HBV-chr16 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
72094979/72061080 (Hg38)
End
72094979/72061080 (Hg38)
Location type
Promoter;downstream
Target gene
HP ; HPR
miRNAs that regulate target gene
hsa-mir-874-3p ; hsa-mir-3157-3p ; hsa-mir-4436b-5p ; hsa-mir-4290 ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-1247-5p ; hsa-mir-6777-3p ; hsa-mir-483-3p
Nearest miRNA
hsa-mir-1225/Upstream/2030658; hsa-mir-11401/Downstream/4807856;
Nearest TSS
ENST00000527434/Upstream/4919; ENST00000566168/Downstream/2144;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/52091, chr16-CpG: 15/Downstream/32150
Upstream sequence
AAGATGTGGTTTGAAGCTGATGGGTGCCAGCCCTGCATTGCTGAGTCAATCAATAAAGAGCTTTCTTTTGACCCATTTCTGTGTTGTGTTCAGTCTTGAG
Downstream sequence
TCTTTTTTATTTGCTCCTTTATGGTCCAGGGTAGTCAGAAGGTATAGAGTCTACTGGGAGTATGGCAGAAAACACCCTAAACCCACTGGAAATCCCGAAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate