MYT1L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004133
Fusion event
HBV-MYT1L integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
2174311/2170539 (Hg38)
End
2174311/2170539 (Hg38)
Location type
Intronic
Target gene
MYT1L
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-7856-5p ; hsa-mir-4503 ; hsa-mir-6792-5p ; hsa-mir-501-5p
Nearest miRNA
hsa-mir-10b/Downstream/3804123;
Nearest TSS
ENST00000437798/Upstream/190989; ENST00000448106/Downstream/148693;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/232751, chr2-CpG: 111/Downstream/14889
Upstream sequence
acagcggtggcagtgatgagcagttgcacggagaccactccctccacaaagtctaaaatcatctctggttctacaaaaaaatgttggcccaccAGGTCTA
Downstream sequence
TGTAACACGATGATTTACAAATTGCCATTTTATAGCTTATTATGTGAAGATGTATTTTCATTAACATAGCAATGTATTCCCATTCTATAATGCTAAATCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate