Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004137
Fusion event
HBV-TMEM167B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
End
109630114/109087492 (Hg38)
Location type
Promoter
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/1190188; hsa-mir-11399/Downstream/511401;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11282, chr1-CpG: 44/Downstream/3074
Upstream sequence
gccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagtcattgcgcccggGCTTAACt
Downstream sequence
tttttttttttttttttttttttttttttttgtggtggagtctcactctgttgcccaggctggagtgcaatggcacaatctcggctcactgcaatatccg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.