Basic Information
VIS ID
TVIS10004138
Fusion event
HBV-LOC105370955 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
87706644/87163413 (Hg38)
End
87706644/87163413 (Hg38)
Location type
Intronic
Target gene
LOC105370955
Nearest miRNA
hsa-mir-10393/Upstream/1337683; hsa-mir-11181/Downstream/782793;
Nearest TSS
ENST00000557528/Upstream/121359; ENST00000560153/Downstream/413516;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/1322529, chr15-CpG: 36/Downstream/1092010
Nearby gene
AGBL1(-134361) ; LINC00052(+413516) ;
Upstream sequence
ACAGCATTCAAAAGAGGCACATTTCTTATCATTTTCTTTGGGTGTGGCAGGCAACTGCTTTATGCAGTAGAGAagaggggcaatcttttatgaagggcat
Downstream sequence
gaactataaagtcctacagacctatgtttagtgcccagtacttctgcttacctgatgctaatacttgagcaagttacttagcatcatgaagcatcaaaat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate