Basic Information
VIS ID
TVIS10004148
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
141094716/141715149 (Hg38)
End
141094716/141715149 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/1067223; hsa-mir-103a-1/Downstream/1964711;
Nearest TSS
ENST00000502646/Upstream/32928; ENST00000506775/Downstream/111176;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/12124, chr5-CpG: 41/Downstream/38095
Nearby gene
ARAP3(-32916) ; PCDH1(+137960) ;
Upstream sequence
GTACAGTAACAGGCTTTACCATAACTTACTCTAAGTACAGTAATGAACAGGCTTTACCATAACTTACTCTAAGTACAGTAACAAACAGGCTTTACCGTAT
Downstream sequence
atgatgaaattacagtccccatcactggggagccatgctgcagtgaagaagaTGTTTATTGATTCACTCACTCACTCACTCTCattcatttggtcaatta
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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