ANKRD30A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004152
Fusion event
HBV-ANKRD30A integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
37473280/37184352 (Hg38)
End
37473280/37184352 (Hg38)
Location type
Intronic
Target gene
ANKRD30A
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1265/Upstream/1543100; hsa-mir-107/Downstream/5813211;
Nearest TSS
ENST00000439456/Upstream/58495; ENST00000475522/Downstream/90;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/58511, chr10-CpG: 20/Downstream/467142
Upstream sequence
ACTAAACAAAGAGAAAGGAAATGTTGAACAAATAAATTTGAAACAGTGTTGTATGGGAAGAATTCTACAGAGTTAGAGGtttttttttaatttctttttt
Downstream sequence
tttttttttttttttAGTAGAAGCATTCAAGTCAGGTAACGGGACAAACAAGAAAGAATGTAGGCAGGTAATTCTGGAGACTCTGAGAAGAACAGTTGAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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