VISDB Viral Integration Site DataBase

VIS ID

TVIS10004168

Fusion event

HBV-RAB11B integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

8455716/8390832 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-6825-5p ; hsa-mir-3175 ; hsa-mir-3191-3p ; hsa-mir-4728-5p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-6815-3p ; hsa-mir-92b-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-25-5p ; hsa-mir-7154-3p ; hsa-mir-4767 ; hsa-mir-658 ; hsa-mir-132-5p ; hsa-mir-1273g-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-6807-5p ; hsa-mir-6807-3p ; hsa-mir-216b-3p ; hsa-mir-217 ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-615-5p ; hsa-mir-4763-5p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-4485-5p ; hsa-mir-4532 ; hsa-mir-3940-3p ; hsa-mir-1321 ; hsa-mir-1343-5p ; hsa-mir-139-3p ; hsa-mir-3150a-3p ; hsa-mir-3178 ; hsa-mir-4524a-3p ; hsa-mir-4716-3p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-4779 ; hsa-mir-6763-5p ; hsa-mir-6794-5p ; hsa-mir-6847-5p ; hsa-mir-6877-5p ; hsa-mir-7845-5p ; hsa-mir-939-5p ; hsa-mir-1286 ; hsa-mir-3180-5p ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4722-5p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-6754-5p ; hsa-mir-6821-5p ; hsa-mir-873-5p

Nearest miRNA

hsa-mir-1227/Upstream/1452; hsa-let-7e/Downstream/1647522;

Nearest TSS

Nearest CpG islands

chr19-CpG: 96/Target, None/Upstream, None/Downstream

Upstream sequence

GAGGCTGTTAGGGCGGGGCCTCCGCAGGGGGTGGAGCTTTCCCAAGATTTGGCGGGCCGGGCTGGGCTGAAAGCGTGATTCGGGATGGGGGCGGGGTTTT

Downstream sequence

TAGGGGCGGGGCTAAGGCGTGATGGGCGTGACCAATAGGTGGGTTGGGCCTGGGCAAACGGAGGCGGGGCTCTCACGAGGCTTGTCCTGATTGGGGCAGC