VISDB Viral Integration Site DataBase

VIS ID

TVIS10004172

Fusion event

HBV-PGPEP1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

18477206/18366396 (Hg38)

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-6751-5p ; hsa-mir-6803-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-6740-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6081 ; hsa-mir-4716-3p ; hsa-mir-6794-5p ; hsa-mir-6885-3p ; hsa-mir-3149 ; hsa-mir-4775 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-1273f ; hsa-mir-6831-3p ; hsa-mir-4735-5p ; hsa-mir-6890-5p ; hsa-mir-590-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-6771-3p ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6866-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-1827 ; hsa-mir-6823-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-610 ; hsa-mir-4286 ; hsa-mir-6729-3p ; hsa-mir-592 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-597-5p ; hsa-mir-431-5p ; hsa-mir-6879-3p ; hsa-mir-924 ; hsa-mir-4524a-3p ; hsa-mir-5007-5p ; hsa-mir-4797-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-219a-2-3p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-498 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-7106-5p ; hsa-mir-342-3p ; hsa-mir-383-3p ; hsa-mir-1228-3p ; hsa-mir-6854-5p ; hsa-mir-122-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-4325 ; hsa-mir-4537 ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-10395/Upstream/84235; hsa-let-7e/Downstream/20166;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/25415, chr19-CpG: 20/Downstream/19857

Upstream sequence

ACTGTGTGACATAGCTCCTTAGAGATATAACCTATTGTCTGCTCATTGTCACGTGTGTGTGTGTCATCTTTGTATTCTTGCAGTGGTTTCACATTTCCTT

Downstream sequence

ACCCAGTCAAGCCAGTATCCCATCCTTCCTCATAATGCACAACATTTGGCTCATTTTATTTTTCTCAttgttattttttatttttattttttgagatgga