Basic Information
VIS ID
TVIS10004176
Fusion event
HBV-LOC105371664 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
192573421/192604291 (Hg38)
End
192573421/192604291 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LOC105371664
Nearest miRNA
hsa-mir-101-1/Upstream/12165901; hsa-mir-1182/Downstream/112037;
Nearest TSS
ENST00000473358/Upstream/28516; ENST00000482095/Downstream/24794;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5923342, chr1-CpG: 56/Downstream/204211
Nearby gene
RGS1(-24262) ; RGS13(+31847) ;
Upstream sequence
TAGGGAATCTATGCTAAGAAGACCTAAAGACATATTGGAAAGAGTCAAATGTCAATCATATAATGTAGGGAGGTTTTGGATGAACTGCTTTAGGCTATAT
Downstream sequence
TCTCTCTCAAGAGGTTACAATGCTTGTTCTAATATATGATGTTGTCAATTTCTTGTACATTTTTAAAAGTATAAAAGTATTTAGCATCGTATGCCCAAAC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate