Basic Information
VIS ID
TVIS10004192
Fusion event
HBV-LINC01036 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
187319203/187350071 (Hg38)
End
187319203/187350071 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LINC01036
Nearest miRNA
hsa-mir-101-1/Upstream/6911681; hsa-mir-1182/Downstream/5366257;
Nearest TSS
ENST00000473358/Upstream/42677; ENST00000614505/Downstream/291155;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/669122, chr1-CpG: 56/Downstream/5458431
Nearby gene
PLA2G4A(-361090) ;
Upstream sequence
AAACATTcaccttaaaaaatttaaaatttctggataaattataatcataatatttttaaatatacatctatttatattcaaaatatagaaaggaaatctg
Downstream sequence
tgggtgcccccccgacaaaaaaaaagaaaaagaaaaaagaaacttaatatatacagtaagcactgaacctgtaaatggcctagggtgttgtacaaatacc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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