PRPF31 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004194
Fusion event
HBV-PRPF31 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q23
Reference genome
GRCh37/hg19
Start
100055857/99134706 (Hg38)
End
100055857/99134706 (Hg38)
Location type
ncRNA_intronic
Target gene
PRPF31
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-383-3p
Nearest miRNA
hsa-mir-12113/Upstream/137246; hsa-mir-1243/Downstream/2106089;
Nearest TSS
ENST00000502981/Upstream/45755; ENST00000506454/Downstream/1831;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/45728, chr4-CpG: 40/Downstream/428864
Upstream sequence
gatattatcatgtccctgcacaaatgagaacattgagacccagagacattatctaccttgtccagaattacacaactagtaaaaaaaaaaaaaaaaaaag
Downstream sequence
attaatGAGTAATTGTGTGCGTAAATACATTTTTAAAGGGAGATAACATGTTGATAGCAAAGGGTAGCATTTTTGTCTATGTGGCAGATAAAATTCTCAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate