ZNF808 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004196
Fusion event
HBV-ZNF808 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
53033100/52529847 (Hg38)
End
53033100/52529847 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF808
Nearest miRNA
hsa-let-7e/Upstream/247954; hsa-mir-10394/Downstream/1136832;
Nearest TSS
ENST00000633603/Upstream/2138; ENST00000461321/Downstream/6138;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1741, chr19-CpG: 59/Downstream/5977
Upstream sequence
ggtctggctgtatcacacaggctggagtgcagtggcgtgatcctctaactgtagcctctacctcttggactcaagtgatcctcctacctcagccttctga
Downstream sequence
gtagctgggaccagaggcatgagccaccaagcccagctagtttacatatatatatatatatatattttttttttttgtagaaacgtggtttcactatgtt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate