Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004202
Fusion event
HBV-EXOC4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
End
133739428/134054675 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10525/Upstream/763687; hsa-mir-10399/Downstream/1152319;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/972339, chr7-CpG: 17/Downstream/72577
Upstream sequence
atgtagaataattaaatcaagcaagcttacatatccctcacctcaaatacttaacactttttttgtgatCCTAGtttgtttgtttttttttttttttttt
Downstream sequence
CTGTGTCCTATCGAGGGTAGCCATTCAGAATAAATTCATTTTGCTAGTTATATTTTTCTAGAGGCACTGCATCAAACGGTTCACTGACATTCAAATACGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.