Basic Information
VIS ID
TVIS10004210
Fusion event
HBV-LINC02462 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
135448874/134527719 (Hg38)
End
135448874/134527719 (Hg38)
Location type
Intronic
Target gene
LINC02462
Nearest miRNA
hsa-mir-12113/Upstream/9020412; hsa-mir-1305/Downstream/8815741;
Nearest TSS
ENST00000502981/Upstream/103852; ENST00000504882/Downstream/231680;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1375246, chr4-CpG: 21/Downstream/416506
Nearby gene
PABPC4L(-325971) ; LINC00613(+1339264) ;
Upstream sequence
tgggcaaatcgcttgagcttaggagttcgggactagcccgggcaacatggtgaaatccctgtctctactaaaaataaaaaaaaaaagtagctggatgtgg
Downstream sequence
aacccaattgattcagtgaactttgccagtttcagttttaagatgccattttttttcctttcaaccctttcagaagactgaaggttatagggacaatggt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate