Basic Information
VIS ID
TVIS10004234
Fusion event
HBV-FYB1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
39261384/39261282 (Hg38)
End
39261384/39261282 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
FYB1
miRNAs that regulate target gene
hsa-mir-4795-3p ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-126-5p ; hsa-mir-4307 ; hsa-mir-656-3p ; hsa-mir-33a-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p
Nearest miRNA
hsa-mir-10397/Upstream/703721; hsa-mir-103a-1/Downstream/14690222;
Nearest TSS
ENST00000502646/Upstream/41676; ENST00000603514/Downstream/9358;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/186148, chr5-CpG: 39/Downstream/163508
Upstream sequence
ccaggcacagatggcttcatacatgaattctatcaaacaattaaggaagtaataatatcaattttacaaaaTGAATAGAGTTCAAAGTATTTTTTGTCTT
Downstream sequence
atctccgaacttaaagtagaattaaaaaaaaaaaaAAGAACGTGTGTAGATTAAGacacacacacacacacacacacacacacacacacaAAGAAATTGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate