VIPR1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004235
Fusion event
HBV-VIPR1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
42555990/42514498 (Hg38)
End
42555990/42514498 (Hg38)
Location type
Intronic
Target gene
VIPR1
miRNAs that regulate target gene
hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-500a-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-532-3p ; hsa-mir-1224-3p ; hsa-mir-4494 ; hsa-mir-4499
Nearest miRNA
hsa-mir-12127/Upstream/3376232; hsa-let-7g/Downstream/1599714;
Nearest TSS
ENST00000440867/Upstream/699; ENST00000495189/Downstream/2320;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/11466, chr3-CpG: 22/Downstream/21598
Upstream sequence
cagctactagggaagctgagatgaggggattgcttgagcccaggaggttgaggctgcagtaagctgtgatcgtgccactgcactccagcctgggcaacag
Downstream sequence
CCAGGCTCTGCCTCTGCTACATCCAGAGGACCGATAGTGacaccacacacacacacacacacacacacacacacatacacacacGCCCAGCCCCTAAGCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate