Basic Information
VIS ID
TVIS10004236
Fusion event
HBV-chr4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
3776812/3775085 (Hg38)
End
3776812/3775085 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-4800/Upstream/1524929; hsa-mir-12113/Downstream/2148190;
Nearest TSS
ENST00000502981/Upstream/8687; ENST00000502918/Downstream/451804;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2750, chr4-CpG: 70/Downstream/96280
Nearby gene
ADRA2C(-6559) ; FAM86EP(+166857) ;
Upstream sequence
AGGAGTGAATCGGGGGAAAGATGATTCCGCAGGTCCTCTCTTCACCCCCGGCTTcctcccctccctcctacctccccttctccaccttctcttctcctcc
Downstream sequence
GTTATTCAAAATTGATTGCTGTTGTTTCCGCCACTATTCAAATAGGAGGCAAACAATAGAGGGATTCTCTCCTCTCGATACCGTTCAGTAACCCACGGAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate