Basic Information
VIS ID
TVIS10004239
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q36.2
Reference genome
GRCh37/hg19
Start
225178625/224313908 (Hg38)
End
225178625/224313908 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/4407343; hsa-mir-1244-1/Downstream/696553;
Nearest TSS
ENST00000437798/Upstream/274589; ENST00000620050/Downstream/88086;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/273890, chr2-CpG: 65/Downstream/128275
Nearby gene
SERPINE2(-274589) ; FAM124B(+64790) ;
Upstream sequence
GTAAATATTCGCGTAGCTAAATTATGCGTTAAATTGCTTTTGCTCCAGACATACCGACGCCTTCACAGGTGTAACTGAAAACCAAATTTGGCCCATCACA
Downstream sequence
ACTGATGAGAATCAACTCAAGTAGGGGCTTTGCTCACAAATGTACAACCTTCCCCAGAGTCCTGATCCTGTGCTACATTTTATTCTTTAAGATCATTATG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate