EYS _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004240
Fusion event
HBV-EYS integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
64876551/64166658 (Hg38)
End
64876551/64166658 (Hg38)
Location type
Intronic
Target gene
EYS
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-510-3p ; hsa-mir-376a-5p ; hsa-mir-4680-5p ; hsa-mir-494-3p
Nearest miRNA
hsa-mir-10398/Upstream/6776446; hsa-mir-10524/Downstream/7210302;
Nearest TSS
ENST00000381078/Upstream/100282; ENST00000424274/Downstream/211137;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/530098, chr6-CpG: 22/Downstream/1134702
Upstream sequence
GAGAAAAACCTGTACTGTAATAATGAATTATTATTTTATGCTTAAACTAGCTCAAATTGGCTGGTTATACTGGCAATCAGAATCCTAGCGTacatacata
Downstream sequence
GTGCTAATGAAGCATTCTGGGAAGACATGATCAATAGCACCAAAGCAAAGAAAATGTTTATGTTCTTTCATTCAACTTCGGAGTGAATTACAAAAATTAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate