Basic Information
VIS ID
TVIS10004241
Fusion event
HBV-LOC107985486 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
30819544/29447224 (Hg38)
End
30819544/29447224 (Hg38)
Location type
Intronic
Target gene
LOC107985486
Nearest miRNA
hsa-let-7c/Upstream/2493181; hsa-mir-3197/Downstream/928070;
Nearest TSS
ENST00000624081/Upstream/70885; ENST00000462262/Downstream/148816;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/147759, chr21-CpG: 61/Downstream/491844
Nearby gene
BACH1-IT2(-73450) ; GRIK1(+89710) ;
Upstream sequence
AATAATCTTCTCATCACATGACACAATGATGAGAACAGACAATATCTCAAAAGACAAAGACCAgctgggtgccatggctcacacctgtaatcccagcact
Downstream sequence
ttgggaggccaaggtgggtgtatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaactccgtctctactgaaaatacaaaaaattagcc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate