Basic Information
VIS ID
TVIS10004243
Fusion event
HBV-MRPL45P2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
45560675/47483309 (Hg38)
End
45560675/47483309 (Hg38)
Location type
ncRNA_intronic
Target gene
MRPL45P2
Nearest miRNA
hsa-mir-1180/Upstream/510209; hsa-mir-10226/Downstream/549573;
Nearest TSS
ENST00000595228/Upstream/59783; ENST00000533573/Downstream/39633;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/58968, chr17-CpG: 35/Downstream/9158
Upstream sequence
tttcttttttttgagtctcgctctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaagctctgcctcccaggttcacgccattctcct
Downstream sequence
gcctcagcctcctgagtagctggtactacaggcgcccgcgaccacacgcggctaaatttttgtatttttagtagagacggggtttcaccgtgttagccag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate