Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004258
Fusion event
HBV-DNAH1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p21.1
Reference genome
Start
End
52422843/52388827 (Hg38)
Location type
Exonic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/94519; hsa-mir-12124/Downstream/457636;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/100789, chr3-CpG: 43/Downstream/20834
Upstream sequence
AAACCACTATAGGACTTCTGTATTCAGCTCtgtcatgtaaagagtgtaggagtcatcactcatatccttataatagcaatattttaaaaactgaacaaac
Downstream sequence
AGAAGGTGCGCTGGCAGGAGACGGTGGAGAACCTGCAGTACATGCTCAACAACATCTCCGGCGATGTCCTGGTGGCCGCTGGCTTTGTGGCCTACCTGGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.