Basic Information
VIS ID
TVIS10004262
Fusion event
HBV-F11-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
187392257/186471103 (Hg38)
End
187392257/186471103 (Hg38)
Location type
ncRNA_intronic
Target gene
F11-AS1
Nearest miRNA
hsa-mir-12113/Upstream/1532663;
Nearest TSS
ENST00000502981/Upstream/44810; ENST00000507644/Downstream/29894;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/35024, chr4-CpG: 21/Downstream/29777
Upstream sequence
agggttagggtggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggtagggttagggttagggttag
Downstream sequence
cttgaagataaactgttaatttacatggtcagagtgagggaggcccctgtggaaacatgtggccttctatctgtagctattagtttaggagcaaaaggaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate