Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004267
Fusion event
HBV-ZNF74 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
Start
End
20754300/20400010 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-1273e ; hsa-mir-5004-5p ; hsa-mir-611 ; hsa-mir-3131 ; hsa-mir-3907 ; hsa-mir-6126 ; hsa-mir-4493 ; hsa-mir-605-3p ; hsa-mir-125a-3p ; hsa-mir-3142 ; hsa-mir-1245b-5p ; hsa-mir-4762-3p ; hsa-mir-4303 ; hsa-mir-8068 ; hsa-mir-4524a-3p ; hsa-mir-6761-5p ; hsa-mir-4329 ; hsa-mir-4251 ; hsa-mir-6812-3p ; hsa-mir-6823-5p ; hsa-mir-4524b-3p ; hsa-mir-5698 ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-143-5p ; hsa-mir-6879-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-6499-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-500b-3p
Nearest miRNA
hsa-mir-1286/Upstream/150799; hsa-let-7a-3/Downstream/634166;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/5489, chr22-CpG: 103/Downstream/5443
Upstream sequence
tgtgaattttactttgttgagtaggtttttggaattccttgtttctgggatttgttctgggatgcagtgaaattacttggcatctatttgatcctttcaa
Downstream sequence
gGATCAAAGCAAGTCTGGAGTTGGGTGGTGGCCAGGATGCCCAGGCCCAGGGGGAGCAGGCAGGAAGGATTGGAAGGCAGTCAGGTGAGGACTGCAGGTA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.